Current version

0.1.0

Last update

10 November 2020

The CCAP Bioinformatics gateway was initiated in 2020 to promote accessibility of CCAP Sequence data which has been collected over many years by Culture Collection of Algae and Protozoa, collaborators and other research institutes. Its aim is to provide a central platform that allows users to browse and access sequences, meta-data and results from common stardards and open-source tools. We provide access to the data through this ShinyApp as well as other data formats, allowing researchers, students and other to integrate the data in their work. Sequence based taxonomic curation of the culture collection is critical, and forms a central aspect of our platform. To further assist researchers to access data and assist their research we provide a series of tools that …

CCAP sequence database

database for molecular sequence storage and phylogenetic evaluation of the CCAP culture collection

The aim of CCAPSeq.db is to provide an integrated,and up-to-date sequence database for the CCAP culture collection.

CCAPSeq.db uses MySQL, an open-source data management system, ideal for interacting with bash/R and PHP, convenient for 'black-box' magic as well as database-driven web-applications

Provided formats:

Flat files

• Download latest release
• Details of files provided

R package

• Install the R package from within R

  install.packages(devtools)
  devtools::install_github("FDBoever/rCCAPSeq")

• How to use the R package